Identification and Expression of Equine MER-Derived miRNAs
Identifieur interne : 000D53 ( Main/Exploration ); précédent : 000D52; suivant : 000D54Identification and Expression of Equine MER-Derived miRNAs
Auteurs : Jeong-An Gim [Corée du Sud] ; Heui-Soo Kim [Corée du Sud]Source :
- Molecules and Cells [ 1016-8478 ] ; 2017.
Descripteurs français
- KwdFr :
- Animaux, Cervelet (physiologie), Duodénum (physiologie), Equus caballus (génétique), Glandes surrénales (physiologie), Génome, Humains, Introns, Poumon (physiologie), Précurseurs des ARN (génétique), Précurseurs des ARN (métabolisme), Rate (physiologie), Régulation de l'expression des gènes, Séquences répétées inversées (génétique), microARN (génétique), microARN (métabolisme), Éléments transposables d'ADN (génétique).
- MESH :
- génétique : Equus caballus, Précurseurs des ARN, Séquences répétées inversées, microARN, Éléments transposables d'ADN.
- métabolisme : Précurseurs des ARN, microARN.
- physiologie : Cervelet, Duodénum, Glandes surrénales, Poumon, Rate.
- Animaux, Génome, Humains, Introns, Régulation de l'expression des gènes.
English descriptors
- KwdEn :
- Adrenal Glands (physiology), Animals, Cerebellum (physiology), DNA Transposable Elements (genetics), Duodenum (physiology), Gene Expression Regulation, Genome, Horses (genetics), Humans, Introns, Inverted Repeat Sequences (genetics), Lung (physiology), MicroRNAs (genetics), MicroRNAs (metabolism), RNA Precursors (genetics), RNA Precursors (metabolism), Spleen (physiology).
- MESH :
- chemical , genetics : DNA Transposable Elements, MicroRNAs, RNA Precursors.
- genetics : Horses, Inverted Repeat Sequences.
- chemical , metabolism : MicroRNAs, RNA Precursors.
- physiology : Adrenal Glands, Cerebellum, Duodenum, Lung, Spleen.
- Animals, Gene Expression Regulation, Genome, Humans, Introns.
Abstract
MicroRNAs (miRNAs) are single-stranded, small RNAs (21–23 nucleotides) that function in gene silencing and translational inhibition via the RNA interference mechanism. Most miRNAs originate from host genomic regions, such as intergenic regions, introns, exons, and transposable elements (TEs). Here, we focused on the palindromic structure of medium reiteration frequencies (MERs), which are similar to precursor miRNAs. Five MER consensus sequences (MER5A1, MER53, MER81, MER91C, and MER117) were matched with paralogous transcripts predicted to be precursor miRNAs in the horse genome (equCab2) and located in either intergenic regions or introns. The MER5A1, MER53, and MER91C sequences obtained from RepeatMasker were matched with the eca-miR-544b, eca-miR-1302, and eca-miR-652 precursor sequences derived from Ensembl transcript database, respectively. Each precursor form was anticipated to yield two mature forms, and we confirmed miRNA expression in six different tissues (cerebrum, cerebellum, lung, spleen, adrenal gland, and duodenum) of one thorough-bred horse. MER5A1-derived miRNAs generally showed significantly higher expression in the lung than in other tissues. MER91C-derived miRNA-5p also showed significantly higher expression in the duodenum than in other tissues (cerebellum, lung, spleen, and adrenal gland). The MER117-overlapped expressed sequence tag generated polycistronic miRNAs, which showed higher expression in the duodenum than other tissues. These data indicate that horse MER transposons encode miR-NAs that are expressed in several tissues and are thought to have biological functions.
Url:
DOI: 10.14348/molcells.2017.2295
PubMed: 28320202
PubMed Central: 5424272
Affiliations:
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Gim</name><affiliation wicri:level="1"><nlm:aff id="af1-molce-40-4-262">Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 46241,<country>Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="af2-molce-40-4-262">Genetic Engineering Institute, Pusan National University, Busan 46241,<country>Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="af3-molce-40-4-262">The Genomics Institute, Life Sciences Department, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919,<country>Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Kim, Heui Soo" sort="Kim, Heui Soo" uniqKey="Kim H" first="Heui-Soo" last="Kim">Heui-Soo Kim</name><affiliation wicri:level="1"><nlm:aff id="af1-molce-40-4-262">Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 46241,<country>Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="af2-molce-40-4-262">Genetic Engineering Institute, Pusan National University, Busan 46241,<country>Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Molecules and Cells</title><idno type="ISSN">1016-8478</idno><idno type="eISSN">0219-1032</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adrenal Glands (physiology)</term><term>Animals</term><term>Cerebellum (physiology)</term><term>DNA Transposable Elements (genetics)</term><term>Duodenum (physiology)</term><term>Gene Expression Regulation</term><term>Genome</term><term>Horses (genetics)</term><term>Humans</term><term>Introns</term><term>Inverted Repeat Sequences (genetics)</term><term>Lung (physiology)</term><term>MicroRNAs (genetics)</term><term>MicroRNAs (metabolism)</term><term>RNA Precursors (genetics)</term><term>RNA Precursors (metabolism)</term><term>Spleen (physiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Cervelet (physiologie)</term><term>Duodénum (physiologie)</term><term>Equus caballus (génétique)</term><term>Glandes surrénales (physiologie)</term><term>Génome</term><term>Humains</term><term>Introns</term><term>Poumon (physiologie)</term><term>Précurseurs des ARN (génétique)</term><term>Précurseurs des ARN (métabolisme)</term><term>Rate (physiologie)</term><term>Régulation de l'expression des gènes</term><term>Séquences répétées inversées (génétique)</term><term>microARN (génétique)</term><term>microARN (métabolisme)</term><term>Éléments transposables d'ADN (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA Transposable Elements</term><term>MicroRNAs</term><term>RNA Precursors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Horses</term><term>Inverted Repeat Sequences</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Equus caballus</term><term>Précurseurs des ARN</term><term>Séquences répétées inversées</term><term>microARN</term><term>Éléments transposables d'ADN</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>MicroRNAs</term><term>RNA Precursors</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Précurseurs des ARN</term><term>microARN</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Cervelet</term><term>Duodénum</term><term>Glandes surrénales</term><term>Poumon</term><term>Rate</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Adrenal Glands</term><term>Cerebellum</term><term>Duodenum</term><term>Lung</term><term>Spleen</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Gene Expression Regulation</term><term>Genome</term><term>Humans</term><term>Introns</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Génome</term><term>Humains</term><term>Introns</term><term>Régulation de l'expression des gènes</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>MicroRNAs (miRNAs) are single-stranded, small RNAs (21–23 nucleotides) that function in gene silencing and translational inhibition via the RNA interference mechanism. Most miRNAs originate from host genomic regions, such as intergenic regions, introns, exons, and transposable elements (TEs). Here, we focused on the palindromic structure of medium reiteration frequencies (MERs), which are similar to precursor miRNAs. Five MER consensus sequences (MER5A1, MER53, MER81, MER91C, and MER117) were matched with paralogous transcripts predicted to be precursor miRNAs in the horse genome (equCab2) and located in either intergenic regions or introns. The MER5A1, MER53, and MER91C sequences obtained from RepeatMasker were matched with the eca-miR-544b, eca-miR-1302, and eca-miR-652 precursor sequences derived from Ensembl transcript database, respectively. Each precursor form was anticipated to yield two mature forms, and we confirmed miRNA expression in six different tissues (cerebrum, cerebellum, lung, spleen, adrenal gland, and duodenum) of one thorough-bred horse. MER5A1-derived miRNAs generally showed significantly higher expression in the lung than in other tissues. MER91C-derived miRNA-5p also showed significantly higher expression in the duodenum than in other tissues (cerebellum, lung, spleen, and adrenal gland). The MER117-overlapped expressed sequence tag generated polycistronic miRNAs, which showed higher expression in the duodenum than other tissues. These data indicate that horse MER transposons encode miR-NAs that are expressed in several tissues and are thought to have biological functions.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ahn, K" uniqKey="Ahn K">K. Ahn</name></author><author><name sortKey="Gim, J A" uniqKey="Gim J">J.A. Gim</name></author><author><name sortKey="Ha, H S" uniqKey="Ha H">H.S. Ha</name></author><author><name sortKey="Han, K" uniqKey="Han K">K. Han</name></author><author><name sortKey="Kim, H S" uniqKey="Kim H">H.S. 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